PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04850.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 262aa    MW: 30472.9 Da    PI: 6.1788
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04850.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM71.12.8e-222594271
                      NAM  2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatg 71
                              pGfrFhPtdeelv +yL kkv  kk  +++e+i+++diyk++PwdLp + +++eke yfF++r +++ +g
  Rsa1.0_04850.1_g00004.1 25 LPGFRFHPTDEELVGFYLSKKVLLKKsSKIDEIISQIDIYKFDPWDLP-RSRNTEKESYFFCRRGRNAGKG 94
                             59*******************887774778888***************.5567789********9987765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.59824176IPR003441NAC domain
SuperFamilySSF1019416.15E-2724141IPR003441NAC domain
PfamPF023652.1E-102691IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEEAMGSWDT RREEQEEEGK QVLKLPGFRF HPTDEELVGF YLSKKVLLKK SSKIDEIISQ  60
IDIYKFDPWD LPRSRNTEKE SYFFCRRGRN AGKGSKTDWM MHEFRLPTAN DTIPGGSTLL  120
NPTPSSLLHA EVWTLCRIFK RNVSSRKYTP DWRELAGGKR MKPQQSKYQE AYISFGDNES  180
SSSTNNINVI ERKESYERNV FQLHQTHHDQ NQILPMDTTS TTTQVDNTVP HFSNDNIDNI  240
TYENWDELRS VVEFAFGPSS LS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-15121414168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893355e-63AC189335.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039A19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013673189.11e-165PREDICTED: transcription factor JUNGBRUNNEN 1
TrEMBLM4FE321e-164M4FE32_BRARP; Uncharacterized protein
STRINGBra039353.1-P1e-164(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12910.11e-112NAC family protein